Dilly adheres to her original orders and protects Joseph by choosing to fight Yamaji. Higan has a surprise visitor who begs him to put an end to the contradictions of the ninja clan. Meanwhile, Mike has been captured at the FBI offices.
Higan wins his duel against Zai, but stops short of killing him. Joseph sends his mercenaries to attack the ninja hideout after cutting his ties with Yamaji. Meanwhile, Mike figures out the key to decrypting the data Emma left behind.
Higan mourns Emma's death when a letter challenging him to a duel arrives from Zai. Mike and Jason want to leak the data they hacked from AUZA to the public but discover they can't due to Emma's external memory drive being encrypted.
Emma and Jason combine their efforts to launch a hacking attack on AUZA which results in them obtaining top-secret information. Meanwhile, Mike and Higan fend off a squadron of mercenaries sent by AUZA to stop them.
The CEO of AUZA dreams of taking total control of the country's energy infrastructure using Yamaji's ninja organization. Emma makes it her personal goal to stop them with Higan's help. Meanwhile, Jason and Mike are still on the run.
As Higan and Lil engage in combat, Higan achieves complete synchronization with his Gusoku Gear, known as "Kamui." Afterward, Yamaji finally orders Zai to eliminate Higan.
Aska rescues Higan from certain doom and her true identity is unveiled. Meanwhile, Mike learns that he is now wanted by his own agency, the FBI.
Mike uses information from Emma to track down Jason, a former AUZA employee. Elsewhere, after having his first attempt to infiltrate AUZA City stopped by Zai, Higan learns of an alternate route from the mysterious benefactor.
Yamaji addresses questions from one of his lieutenants regarding Higan's survival. Meanwhile, Mike joins forces with Higan and Emma to launch their own independent investigation into AUZA.
A team of assassins exacts a bloody retribution on Joe Logan – a former ninja who escaped his clan – and his family for betraying their ancient code. Rising from his seeming "death," Joe will re-emerge as his former self – Ninja Kamui – to avenge his family and friends and bring down the very clan that made him.