With the Lost Ground and Inners rebuilding, Kazuma and Ryuhou can finally fight, free of distractions.
Kazuma and Ryuhou finally come across Kyouji Mujyo. Kazuma takes him on while Ryuhou fights the Crystallized Form.
Kazuma and Ryuhou break into Kyouji Mujyo's fortress. They split up for the time being and each meet up with a former ally.
After being reunited after so long, Kazuma and Kanami reminisce about the past. Elsewhere, Ryuhou, Tachibana, Sherrice, Mimori, and Cougar all discuss their next plan of action.
Sherrice gets attacked by the darths led by Kigetsuki and his alter, Tokonatsu Three Sisters. Just when it looks grim for Sherrice, Ryuhou and the others show up. But, can Ryuhou fight back knowing that the villagers' lives are in danger? And will Kigetsuki get Ryuhou to open up an alter gate? Meanwhile, Cougar and Kazuma are heading to the scene.
Wanting to find Kazuma, Kanami sets off. Ryuhou goes with her to protect her, while Sherrice stays behind and looks over the village. Meanwhile, Cougar informs Mimori and Tachibana that he knows where Ryuhou is. The two set off to find him, but instead come across Biff.
Ayase and Kazuma are forced to fight one another. Ayase explains that after being captured by Holy they experimented on her and made her alter more powerful. Now, if she wants her dying brother to get better, she has to kill Kazuma.
Sou Kigetsuki and Unkei, along with the Tokonatsu Three Sisters, devise a plain against Ryuhou. They want to see how powerful he's gotten since he saw the "other side".
Eight months after the fight and disappearance of Kazima and Ryuhou, Mimori, Tachibana, and Cougar search the Lost Ground, seeking answers and the whereabouts of their friends. Elsewhere, Kanami is captured and forced to work at a labor camp.
Wanting revenge for the death of his friend, Kazuma attacks a Hold camp. Hearing the news, Ryuhou sets out to find him. The two eventually meet and fight it out. Mimori and Tachibana manage to catch up to them, as do Urizane and Sherrice.
Wanting to stop Holy once and for all, Kazuma ventures into the Alter forest in hopes of gaining more power.
After being told that he must re-enter Holy to rescue the others, Kazuma charges right though the front door. Unfortunately, a Holy member, Unkei uses his alter, the Mad Script, to control Kazuma and the events that surround him.
Trapped underground, Kazuma and Tachibana call a temporary truce in order to find a way out. When they do a find a way out, a giant monster appears. Kazuma instantly resorts to attacking it, which Tachibana disapproves of.
With much resentment toward Hold and Holy, some Native Alters, including Kazuma and Kimishima, plan an attack on a Holy cargo van. Knowing this, Holy plats a trap.
After returning from a mission, Kazuma and Kimishima find Kanami lying on the floor sick. Without the proper medical knowledge, Kazuma and Kimishima are forced to find a doctor of Holy.
After hearing about Kazuma's escape from Holy, a new client, Ayase Terada, hires Kazuma and Kimishima to rescue her sick brother and the villagers from a Hold camp.
The aftermath of a mysterious environmental catastrophe has left the land in complete desolation! While mankind has been able to rebuild the city, the catastrophe has caused some humans to undergo genetic mutations granting them special powers and abilities. These genetically enhanced humans are known as Alters. Kazuma has spent his entire life in the wastelands relying on his special powers to survive, but when a secret organization called ‘Holy’ threatens to take away his freedom, he will be left with a choice to join or die. His fight to seek the truth behind the ‘Holy’ will rage and consume humanity and Alter alike!