Max's quest to find his son ends with the return of Tess and the baby, and the gang find themselves in danger again while trying to protect the child. Meanwhile, Jesse encourages Isabel to reveal her true origins to her parents, and the elder Evanses provide a way to ensure their grandchild's safety.
When the gang attempts to return to their normal lives, they soon find that their lives have gotten a lot more complicated, which includes Jesse attempting to come to terms with his newfound knowledge but matters are complicated when he finds himself under FBI scrutiny, and Max's "death" creates a unique situation within the alien authority structure, resulting in a new King...Michael.
Michael, Jesse and Valenti call on a discredited doctor to help the wounded Isabel. Also, Clayton Wheeler undergoes an amazing transformation and soon finds himself drawn to Liz; and Jesse quizzes Michael about Isabel's alien roots.
When a journalist friend of Jesse's comes to Roswell, Isabel discovers he's investigating her, Max and Michael, after he witnesses Michael using his powers. Meanwhile, Isabel fantasizes about what her life would be like if Jesse knew her alien secret through the device of a 1960s sitcom a la "Bewitched."
In an attempt to find Roswell's legendary New Year's Rave, Max and Maria join forces. Meanwhile, Liz connects with her father and Isabel helps Kyle find the perfect date for New Year's.
When an old love visits Maria her passion for music resurfaces, which jeopardizes her relationship with Michael. Meanwhile, while Max's father is still trying to put together all the pieces of his investigation, Isabel joins Max in the quest to stop him.
Right before her wedding, Isabel is torn with doubt when she has erotic dreams of her former alien lover, Kivar. Meanwhile, a reluctant Max agrees to serve as Jesse's best man, while attempting to investigate him at the bachelor party.
With Alex's ghost as her guide, Isabel must finally confront her fears about love and her conflicted feelings for Jesse. Meanwhile, Maria happily discovers a whole new, human part of Michael in, of all places, a bowling alley, and Liz and Max struggle to remain together despite her father's insistent disapproval.
Michael works as a security guard, but when he tries to loosen up his co-workers, he causes more harm than good. Meanwhile, Max and Liz continue to see each other despite her parents' wishes.
Bizarre things start happening in the little New Mexico town where UFOs were spotted in 1947. Cut to 1999, when a cute high-school student saves the life of a teenage waitress. Surrounded by cliques of clever, angst-filled classmates, the two form a bond that threatens the survival of a secret universe involving superhuman powers, a yen for hot sauce and an alien gene pool.